Introduction to protein structure prediction : methods and algorithms /

"This book helps unravel the relationship of pure sequence information and three-dimensional structure, which remains one of the great fundamental problems in molecular biology and bioinformatics. It describes key applications of modeled structures, focusing on the methods and algorithms that a...

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Bibliographic Details
Online Access: Full text (MCPHS users only)
Other Authors: Huzefa, Rangwala (Editor), Karypis, G. (George) (Editor)
Format: Electronic eBook
Language:English
Published: Hoboken, N.J. : Wiley, 2010
Subjects:
Local Note:ProQuest Ebook Central
Table of Contents:
  • Frontmatter
  • Color Plates
  • Introduction to Protein Structure Prediction / Huzefa Rangwala, George Karypis
  • CASP: A Driving Force in Protein Structure Modeling / Andriy Kryshtafovych, Krzysztof Fidelis, John Moult
  • The Protein Structure Initiative / Andras Fiser, Adam Godzik, Christine Orengo, Burkhard Rost
  • Prediction of One-Dimensional Structural Properties Of Proteins by Integrated Neural Networks / Yaoqi Zhou, Eshel Faraggi
  • Local Structure Alphabets / Agnel Praveen Joseph, Auřlie Bornot
  • Shedding Light on Transmembrane Topology / G̀bor E Tusǹdy, Istv̀n Simon
  • Contact Map Prediction by Machine Learning / Alberto JM Martin, Catherine Mooney, Ian Walsh, Gianluca Pollastri
  • A Survey of Remote Homology Detection and Fold Recognition Methods / Huzefa Rangwala
  • Integrative Protein Fold Recognition by Alignments and Machine Learning / Allison N Tegge, Zheng Wang, Jianlin Cheng
  • Tasser-Based Protein Structure Prediction / Shashi Bhushan Pandit, Hongyi Zhou, Jeffrey Skolnick
  • Composite Approaches to Protein Tertiary Structure Prediction: A Case-Study by I-Tasser / Ambrish Roy, Sitao Wu, Yang Zhang
  • Hybrid Methods for Protein Structure Prediction / Dmitri Mourado, Bostjan Kobe, Nicholas E Dixon, Thomas Huber
  • Modeling Loops in Protein Structures / Narcis Fernandez-Fuentes, Andras Fiser
  • Model Quality Assessment Using a Statistical Program that Adopts a Side Chain Environment Viewpoint / Genki Terashi, Mayuko Takeda-Shitaka, Kazuhiko Kanou, Hideaki Umeyama
  • Model Quality Prediction / Liam J McGuffin
  • Ligand-Binding Residue Prediction / Chris Kauffman, George Karypis
  • Modeling and Validation of Transmembrane Protein Structures / Maya Schushan, Nir Ben-Tal
  • Structure-Based Machine Learning Models for Computational Mutagenesis / Majid Masso, Iosif I Vaisman
  • Conformational Search for the Protein Native State / Amarda Shehu
  • Modeling Mutations in Proteins Using Medusa and Discrete Molecule Dynamics / Shuangye Yin, Feng Ding, Nikolay V Dokholyan
  • Index.