Genomics : essential methods /

Table of Contents: “…Front Matter -- Colour Plates -- High-Resolution Analysis of Genomic Copy Number Changes / Mario Hermsen, Jordy Coffa, Bauke Ylstra, Gerrit Meijer, Hans Morreau, Ronald van Eijk, Jan Oosting, Tom van Wezel -- Identification of Polymorphic Markers for Genetic Mapping / Daniel C Koboldt, Raymond D Miller -- Genotyping and LOH Analysis on Archival Tissue using SNP Arrays / Ronald van Eijk, Anneke Middeldorp, Esther H Lips, Marjo van Puijenbroek, Hans Morreau, Jan Oosting, Tom van Wezel -- Genetic Mapping of Complex Traits / Nancy L Saccone -- RNA Amplification Strategies: Toward Single-Cell Sensitivity / Natalie Stickle, Norman N Iscove, Carl Virtanen, Mary Barbara, Carolyn Modi, Toni Di Berardino, Ellen Greenblatt, Ted Brown, Neil Winegarden -- Real-Time Quantitative RT-PCR for mRNA Profiling / Stephen A Bustin, Tania Nolan -- Gene Expression in Mammalian Cells / F̌lix Recillas-Targa, Georgina Guerrero, Mart̕n Escamilla-del-Arenal, Ȟctor Rinc̤n-Arano -- Using Yeast Two-Hybrid Methods to Investigate Large Numbers of Binary Protein Interactions / Panagoula Charalabous, Jonathan Woodsmith, Christopher M Sanderson -- Prediction of Protein Function / Hon Nian Chua -- Elucidating Gene Function through use of Genetically Engineered Mice / Mary P Heyer, C̀tia Feliciano, Jôo Peca, Guoping Feng -- Delivery Systems for Gene Transfer / Charlotte Lawson, Louise Collins -- Gene Therapy Strategies: Constructing an AAV Trojan Horse / M Ian Phillips, Edilamar M de Oliveira, Leping Shen, Yao Liang Tang, Keping Qian -- An Introduction to Proteomics Technologies for the Genomics Scientist / David B Friedman -- Index.…”
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Genomics : the science and technology behind the Human Genome Project / by Cantor, Charles R., 1942-

Subjects: “…Human Genome Project.…”

Genomes by Brown, T. A. (Terence A.)

Subjects: “…Genomes. sh 85053924…”
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The deeper genome : why there is more to the human genome than meets the eye / by Parrington, John

Table of Contents: “…How the genome lost its junk -- The inheritors -- Life as a code -- Switches and signals -- The spacious genome -- RNA out of the shadows -- It's a jungle in there! …”
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Principles of Genome Analysis and Genomics. by Primrose, Sandy B.

Table of Contents: “…Preface; Abbreviations; CHAPTER 1 Setting the scene: the new science of genomics; Introduction; Physical mapping of genomes; Sequencing whole genomes; Benefits of genome sequencing; Outline of the rest of the book; Terminology; Keeping up to date; Suggested reading; Useful websites; CHAPTER 2 The organization and structure of genomes; Introduction; Genome size; Sequence complexity; Introns and exons; Genome structure in viruses and prokaryotes; The organization of organelle genomes; The organization of nuclear DNA in eukaryotes; Suggested reading; Useful websites…”
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Crumbling Genome. by Kondrashov, Alexey S.

Table of Contents: “…8.2 Effective Population Size8.3 Junk DNA Provides the Simplest Evidence for Evolution; 8.4 Finding Functioning Genome Segments; 8.5 The Genomic Rate of Deleterious Mutations; Further Reading; Chapter 9 It Takes All the Running You Can Do ; 9.1 Middle Class Neighborhood for Drosophila; 9.2 Selection Against Deleterious Alleles; 9.3 Mutation-Selection Equilibrium; 9.4 Inbreeding Depression; 9.5 Dangerous Slightly Deleterious Alleles; Further Reading; Chapter 10 Phenomenon of Imperfection ; 10.1 Phenotypic and Genotypic Imperfection; 10.2 Five Evolutionary Causes of Imperfection.…”
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Mes gènes, mon identité? : comprendre la génétique & ses enjeux by Matthijs, Gert

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Horizon. The book of man

Subjects: “…Human Genome Project.…”
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Modern Genome Annotation : the BioSapiens Network. by Frishman, Dmitrij, Carrasco Valencia, Alfonso

Table of Contents: “…BIOSAPIENS: A European Network of Excellence to develop genome annotation resources -- BIOSAPIENS: A European Network of Excellence to develop genome annotation resources -- Gene definition -- State of the art in eukaryotic gene prediction -- Quality control of gene predictions -- Gene regulation and expression -- Evaluating the prediction of cis-acting regulatory elements in genome sequences -- A biophysical approach to large-scale protein-DNA binding data -- From gene expression profiling to gene regulation -- Annotation and genetics -- Annotation, genetics and transcriptomics -- Functional annotation of proteins -- Resources for functional annotation -- Annotating bacterial genomes -- Data mining in genome annotation -- Modern genome annotation: the BioSapiens network -- Structure to function -- Harvesting the information from a family of proteins -- Protein structure prediction -- Structure prediction of globular proteins -- The state of the art of membrane protein structure prediction: from sequence to 3D structure -- Protein-protein complexes, pathways and networks -- Computational analysis of metabolic networks -- Protein-protein interactions: analysis and prediction -- Infrastructure for distributed protein annotation -- Infrastructure for distributed protein annotation -- Applications -- Viral bioinformatics -- Alternative splicing in the ENCODE protein complement.…”
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Cancer and the genome : the issue.

“…ACancer and the genome : the lesson…”
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Cancer and the Genome: The Lesson.

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Somatic Genome Variation. by Li, Xiu-Qing

Table of Contents: “…Cover; Title Page; Copyright; Contents; List of Contributors; Preface and Introduction; Acknowledgments; About the Editor; Part I Somatic Genome Variation in Animals and Humans; Chapter 1 Polyploidy in Animal Development and Disease; 1.1 Introduction; 1.2 Mechanisms Inducing Somatic Polyploidy; 1.2.1 Cell Fusion; 1.2.2 Acytokinetic Mitosis; 1.2.3 Endomitosis; 1.2.4 Endoreplication; 1.2.5 Gene Amplification; 1.2.6 Ploidy Reversal; 1.3 The Core Cell Cycle Machinery; 1.4 Genomic Organization of Polyploid Cells.…”
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The human genome : features, variations and genetic disorders /

Table of Contents: “…Carter [and others] -- Itinerant genome / Branko Borstnik, Borut Oblak, and Danilo Pumpernik -- Wobble splicing : subtle alternative splicing at tandem splice sites in human genome / Kuo-wang Tsai and Wen-chang Lin -- Alternative splicing transcripts affected by junction tandem repeats in the human genome / Chun-Hung Lai and Wen-chang Lin -- Genetic susceptibility to complex traits : moving towards informed analysis of whole-genome screens / Michael R. …”
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Exercise genomics /

Subjects: “…Genomics.…”
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The genomic revolution : implications for treatment and control of infectious disease : working group summaries /

Table of Contents: “…-- Explore the emerging role of public health in integrating genomics in surveillance, outbreak investigations and control and prevention of infectious diseases -- Natural variation -- What will it take to sequence an individual's genome for under $1,000 in less than 10 years? …”
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Nutritional genomics : the impact of dietary regulation of gene function on human disease /

Table of Contents: “…Baur -- Nutritional genomics : cellular signaling and molecular targets / Wayne R. …”
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Seed Genomics. by Becraft, Philip W.

Table of Contents: “…Coexpression Studies and Systems Biology ApproachesMapping Populations for Gene Discovery; Perspective; Acknowledgments; References; Chapter 7: Genomic Specification of Starch Biosynthesis in Maize Endosperm; Introduction; Overview of Starch Biosynthetic Pathway; Genomic Specification of Endosperm Starch Biosynthesis in Maize; Conclusion; References; Chapter 8: Evolution, Structure, and Function of Prolamin Storage Proteins; Introduction; Prolamin Multigene Families; Endosperm Texture and Storage of Prolamins; Conclusion; References; Chapter 9: Improving Grain Quality: Wheat; Introduction.…”
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Aging of the genome : the dual role of DNA in life and death / by Vijg, Jan

Table of Contents: “…The logic of aging -- Genome structure and function -- Genome maintenance -- Genome instability and accerated aging -- The aging genome -- From genome to phenome -- A genomic limit to life?…”
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Cancer Genomics : Disease Markers. by Strausberg, R. L.

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Plant genome : biodiversity and evolution /

Subjects: “…Plant genomes.…”
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The implicit genome /

Table of Contents: “…Eukaryotic transposable elements: teaching old genomes new tricks / Susan R. Wessler -- Immunoglobulin recombination signal sequences: somatic and evolutionary functions / Ellen Hsu -- Somatic evolution of antibody genes / Rupert Beale and Dagmar Iber -- Regulated and unregulated recombination of G-rich genomic regions / Nancy Maizels -- The role of the genome in the initiation of meiotic recombination / Rhona H. …”
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Genomics and democracy : towards a 'lingua democratica' for the public debate on genomics /

Table of Contents: “…Cor van der Weele: Morality and Genomics: Which Comes First? Towards Cooperative Inquiry; 6. …”
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Equine Genomics. by Chowdhary, Bhanu P.

Table of Contents: “…Equine Genomics; Contents; Contributors; Preface; 1 Defining the equine genome: The nuclear genome and the mitochondrial genome; Nuclear Genome of the Horse; Chromosome number, karyotype, and schematic presentation; Application of different banding techniques; Chromosome aberrations -- a brief overview; Mitochondrial Genome of the Horse; Structure, function, and utility; Phylogenetics of Equus; New research directions; Acknowledgments; References; 2 Genetic linkage maps; Introduction; Genetic Linkage Maps; Polymorphic Genetic Markers; Reference Pedigrees; Horse Genetic Linkage Maps.…”
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Mind genomics : a guide to data-driven marketing strategy. by Milutinovic, Veljko

Table of Contents: “…Foreword by Howard Moskowitz; Preface; Contents; About the Authors; About Howard Moskowitz; Introduction; 1 Introduction to Basic Concepts of Mind Genomics; Abstract ; 1.1 Phases of Mind Genomics; 1.1.1 Phase #1: Building of the MicroScience (Stage #1); 1.1.2 Phase #1: Polling of the Market (Stage #2); 1.1.3 Phase #1: Analysis of the Polling Results (Stage #3); 1.1.4 Phase #1: The Broadband Marketing Campaign with the Best Three Slogans (Stage #4); 1.1.5 Phase #2: Typing of the Customer (Stage #1); 1.1.6 Phase #2: Determination of the Target Action (Stage #2).…”
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After the genome : a language for our biotechnological future /

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Genomic Perl : from bioinformatics basics to working code / by Dwyer, Rex A.

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The Regulatory Genome : Gene Regulatory Networks In Development And Evolution. by Davidson, Eric H.

Table of Contents: “…PREFACE; THE FRAMEWORK; THE REGULATORY APPARATUS ENCODED IN THE DNA; THE REGULATORY DEMANDS OF DEVELOPMENT; EVOLUTION, DEVELOPMENT, AND THE REGULATORY GENOME; GENERAL OPERATING PRINCIPLES; MODULARITY, A GENERAL PROPERTY OF GENOMIC REGULATORY CONTROL UNITS; INSIDE THE cis-REGULATORY MODULE: LOGIC PROCESSING AND INPUT/OUTPUT RELATIONS; cis-REGULATORY DESIGN; CONTROL BY SEQUENCE-SPECIFIC INTERACTIONS AMONG DISTANT cis-REGULATORY ELEMENTS; DEVELOPMENTAL PROCESSES OF THE PREGASTRULAR EMBRYO; COMPARATIVE VIEW OF EMBRYONIC PROCESSES, AND THE ORGANIZATION OF THE UNDERLYING GENE.…”
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The genome generation / by Finkel, Elizabeth

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Regulatory genomics : proceedings of the 3rd annual RECOMB workshop : National University of Singapore, Singapore 17-18 July 2006 /

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The genomics age : how DNA technology is transforming the way we live and who we are / by Smith, Gina

Table of Contents: “…Preliminaries; CONTENTS; Before We Begin; 1 It's Who You Are; 2 How We Got Here; 3 Your Genome An Owner's Manual; 4 The DNA Files; 5 Facing Destiny; 6 The Fountain of Aging Well; 7 Closing in on Cancer; 8 Cloning and Stem Cells; 9 Gene Therapy; 10 DNA and Society; Glossary.…”
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Genomic medicine : principles and practice /

Table of Contents: “…Genes, Genetics, and Human Genomics; 2. The human genome-structure and organization; 3. …”
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The developing genome : an introduction to behavioral epigenetics / by Moore, David Scott, 1960-

Table of Contents: “…Cover; The Developing Genome; Copyright; Contents; Acknowledgments; Part I; 1 Context; 2 Phenotypes; 3 Development; 4 DNA; 5 Zooming in on DNA; 6 Regulation; 7 Zooming in on Regulation; Part II; 8 Epigenetics; 9 Zooming in on Epigenetics; 10 Experience; 11 Zooming in on Experience; 12 Primates; 13 Memory; 14 Zooming in on Memory; 15 Nutrition; 16 Zooming in on Nutrition; Part III; 17 Inheritance; 18 Multiplicity; 19 Evidence; 20 Grandparents; Part IV; 21 Caution; 22 Hope; 23 Conclusions; Index.…”
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Trading the genome : investigating the commodification of bio-information / by Parry, Bronwyn

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The evolution of the genome /

Table of Contents: “…Genome size evolution in animals /…”
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Ophthalmo-genomics : Met het oog op genetische verschillen. by Bergen, Arthur

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Mammalian Genomics. by Ruvinsky, A.

Table of Contents: “…Linkage Mapping; 2. Mapping Genomes at the Chromosome Level; 3. Mapping Genomes at the Molecular Level; 4. …”
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Viral genomes : diversity, properties, and parameters /

Table of Contents: “…Mishchenko [and others] -- Comparative sequence analysis of North American to South American Eastern equine encephalitis virus genomes / Peter L. Platteborze -- Lyssavirus genome / Xianfu Wu [and others].…”
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Genomics in endocrinology : DNA microarray analysis in endocrine health and disease /

Table of Contents: “…. -- DNA microarray analysis of effects of TSH, iodide, cytokines, and therapeutic agents on gene expression in cultured human thyroid follicles. -- Genomics and polycystic ovary syndrome (PCOS): the use of microarray analysis to identify new candidate genes. -- Microarray analysis of alterations induced by obesity in white adipose tissue gene expression profiling. -- Novel molecular signaling and classification of human clinically nonfunctioning pituitary adenomas identified by microarray and reverse transcription-quantitative polymerase chain reaction. -- Gene expression studies of prostate hyperplasia in prolactin transgenic mice.…”
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After the genome : a language for our biotechnological future /

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Genome analyis : current procedures and applications /

Table of Contents: “…Identification of structural variation -- Methods for RNA isolation, characterization and sequencing (RNA-Seq) -- Transcriptome reconstruction and quantification from RNA sequencing data -- Identification of small interfering RNA from next-generation sequencing data -- Motif discovery and motif finding in ChIP-Seq Data -- Mammalian enhancer prediction -- DNA patterns for nucleosome positioning -- Hypermethylation in cancer -- Identification and analysis of transposable elements in genomic sequences -- The current state of metagenomic analysis -- Metatranscriptomics -- Inferring viral quasispecies spectra from shotgun and amplicon next-generation sequencing reads -- DNA instability in bacterial genomes: causes and consequences -- Comparative methods for RNA structure prediction -- Context-free grammars and RNA secondary structure prediction -- Stochastic context-free grammars and RNA secondary structure prediction.…”
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